Indeed. I was hoping you'll fight the main villain again with Legendaries in their team. For example, you'll face Cyrus again with Dialga, Palkia, and Giratina in his team.
That's not Mewtwo. It has three toes. My conclusion? Since the "Pokemon strong enough for [Giovanni's] aims" escaped, he went out and got ANOTHER one made.
Also: Notice Archie is the only one w/o a Pokeball. My conclusion? He's so awesome, he DOESN'T NEED ONE to make Kyogre obey.
I love how Archie is too cool to have an actual Pokeball. I guess he just controls it with his awesomeness. Also, does he remind anyone else of Shunsui Kyōraku?